Cross-Subject Emotion Recognition with Sparsely-Labeled Peripheral Physiological Data Using SHAP-Explained Tree Ensembles

There are still many challenges of emotion recognition using physiological data despite the substantial progress made recently. In this paper, we attempted to address two major challenges. First, in order to deal with the sparsely-labeled physiological data, we first decomposed the raw physiological data using signal spectrum analysis, based on which we extracted both complexity and energy features. Such a procedure helped reduce noise and improve feature extraction effectiveness. Second, in order to improve the explainability of the machine learning models in emotion recognition with physiological data, we proposed Light Gradient Boosting Machine (LightGBM) and SHapley Additive exPlanations (SHAP) for emotion prediction and model explanation, respectively. The LightGBM model outperformed the eXtreme Gradient Boosting (XGBoost) model on the public Database for Emotion Analysis using Physiological signals (DEAP) with f1-scores of 0.814, 0.823, and 0.860 for binary classification of valence, arousal, and liking, respectively, with cross-subject validation using eight peripheral physiological signals. Furthermore, the SHAP model was able to identify the most important features in emotion recognition, and revealed the relationships between the predictor variables and the response variables in terms of their main effects and interaction effects. Therefore, the results of the proposed model not only had good performance using peripheral physiological data, but also gave more insights into the underlying mechanisms in recognizing emotions

Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-Modal Glioma Segmentation

In large studies involving multi protocol Magnetic Resonance Imaging (MRI), it can occur to miss one or more sub-modalities for a given patient owing to poor quality (e.g. imaging artifacts), failed acquisitions, or hallway interrupted imaging examinations. In some cases, certain protocols are unavailable due to limited scan time or to retrospectively harmonise the imaging protocols of two independent studies. Missing image modalities pose a challenge to segmentation frameworks as complementary information contributed by the missing scans is then lost. In this paper, we propose a novel model, Multi-modal Gaussian Process Prior Variational Autoencoder (MGP-VAE), to impute one or more missing sub-modalities for a patient scan. MGP-VAE can leverage the Gaussian Process (GP) prior on the Variational Autoencoder (VAE) to utilize the subjects/patients and sub-modalities correlations. Instead of designing one network for each possible subset of present sub-modalities or using frameworks to mix feature maps, missing data can be generated from a single model based on all the available samples. We show the applicability of MGP-VAE on brain tumor segmentation where either, two, or three of four sub-modalities may be missing. Our experiments against competitive segmentation baselines with missing sub-modality on BraTS'19 dataset indicate the effectiveness of the MGP-VAE model for segmentation tasks.Comment: Accepted in MICCAI 202